Python Module Index

p
 
p
pydft_qmmm
    pydft_qmmm.calculators
    pydft_qmmm.calculators.calculator
    pydft_qmmm.calculators.composite_calculator
    pydft_qmmm.calculators.interface_calculator
    pydft_qmmm.common
    pydft_qmmm.common.atom
    pydft_qmmm.common.constants
    pydft_qmmm.common.file_manager
    pydft_qmmm.common.resource_manager
    pydft_qmmm.common.utils
    pydft_qmmm.common.utils.lattice_utils
    pydft_qmmm.common.utils.misc_utils
    pydft_qmmm.common.utils.selection_utils
    pydft_qmmm.hamiltonians
    pydft_qmmm.hamiltonians.hamiltonian
    pydft_qmmm.hamiltonians.mm_hamiltonian
    pydft_qmmm.hamiltonians.qm_hamiltonian
    pydft_qmmm.hamiltonians.qmmm_hamiltonian
    pydft_qmmm.integrators
    pydft_qmmm.integrators.integrator
    pydft_qmmm.integrators.langevin_integrator
    pydft_qmmm.integrators.verlet_integrator
    pydft_qmmm.interfaces
    pydft_qmmm.interfaces.interface
    pydft_qmmm.interfaces.interface_manager
    pydft_qmmm.interfaces.openmm
    pydft_qmmm.interfaces.openmm.openmm_factory
    pydft_qmmm.interfaces.openmm.openmm_interface
    pydft_qmmm.interfaces.openmm.openmm_utils
    pydft_qmmm.interfaces.psi4
    pydft_qmmm.interfaces.psi4.psi4_interface
    pydft_qmmm.interfaces.psi4.psi4_utils
    pydft_qmmm.interfaces.qmmm_pme_openmm
    pydft_qmmm.interfaces.qmmm_pme_openmm.openmm_factory
    pydft_qmmm.interfaces.qmmm_pme_openmm.openmm_interface
    pydft_qmmm.interfaces.qmmm_pme_openmm.openmm_utils
    pydft_qmmm.interfaces.qmmm_pme_psi4
    pydft_qmmm.interfaces.qmmm_pme_psi4.psi4_interface
    pydft_qmmm.interfaces.qmmm_pme_psi4.psi4_utils
    pydft_qmmm.plugins
    pydft_qmmm.plugins.atom_partition
    pydft_qmmm.plugins.atom_partition.atom_partition
    pydft_qmmm.plugins.center
    pydft_qmmm.plugins.center.center
    pydft_qmmm.plugins.centroid_partition
    pydft_qmmm.plugins.centroid_partition.centroid_partition
    pydft_qmmm.plugins.firstatom_partition
    pydft_qmmm.plugins.firstatom_partition.firstatom_partition
    pydft_qmmm.plugins.plugin
    pydft_qmmm.plugins.plugin_manager
    pydft_qmmm.plugins.plumed
    pydft_qmmm.plugins.plumed.plumed
    pydft_qmmm.plugins.pme
    pydft_qmmm.plugins.pme.pme
    pydft_qmmm.plugins.pme.pme_utils
    pydft_qmmm.plugins.rigid
    pydft_qmmm.plugins.rigid.rigid
    pydft_qmmm.plugins.rigid.rigid_utils
    pydft_qmmm.plugins.settle
    pydft_qmmm.plugins.settle.settle
    pydft_qmmm.plugins.settle.settle_utils
    pydft_qmmm.plugins.wrap
    pydft_qmmm.plugins.wrap.wrap
    pydft_qmmm.system
    pydft_qmmm.system.system
    pydft_qmmm.system.system_atom
    pydft_qmmm.system.variable
    pydft_qmmm.wrappers
    pydft_qmmm.wrappers.logger
    pydft_qmmm.wrappers.simulation