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PyDFT-QMMM documentation
PyDFT-QMMM documentation

Contents:

  • Introduction
  • Getting Started
  • Bibliography
  • Code Documentation
    • pydft_qmmm.calculators
      • pydft_qmmm.calculators.calculator
        • pydft_qmmm.calculators.calculator.Calculator
        • pydft_qmmm.calculators.calculator.CalculatorPlugin
        • pydft_qmmm.calculators.calculator.Results
      • pydft_qmmm.calculators.composite_calculator
        • pydft_qmmm.calculators.composite_calculator.CompositeCalculator
        • pydft_qmmm.calculators.composite_calculator.CompositeCalculatorPlugin
        • pydft_qmmm.calculators.composite_calculator.PartitionPlugin
      • pydft_qmmm.calculators.potential_calculator
        • pydft_qmmm.calculators.potential_calculator.PotentialCalculator
    • pydft_qmmm.hamiltonians
      • pydft_qmmm.hamiltonians.hamiltonian
        • pydft_qmmm.hamiltonians.hamiltonian.CompositeHamiltonian
        • pydft_qmmm.hamiltonians.hamiltonian.CouplingHamiltonian
        • pydft_qmmm.hamiltonians.hamiltonian.Hamiltonian
        • pydft_qmmm.hamiltonians.hamiltonian.PotentialHamiltonian
        • pydft_qmmm.hamiltonians.hamiltonian.StandaloneHamiltonian
      • pydft_qmmm.hamiltonians.mm_hamiltonian
        • pydft_qmmm.hamiltonians.mm_hamiltonian.MMHamiltonian
      • pydft_qmmm.hamiltonians.qm_hamiltonian
        • pydft_qmmm.hamiltonians.qm_hamiltonian.QMHamiltonian
      • pydft_qmmm.hamiltonians.qmmm_hamiltonian
        • pydft_qmmm.hamiltonians.qmmm_hamiltonian.QMMMHamiltonian
    • pydft_qmmm.integrators
      • pydft_qmmm.integrators.integrator
        • pydft_qmmm.integrators.integrator.Integrator
        • pydft_qmmm.integrators.integrator.IntegratorPlugin
      • pydft_qmmm.integrators.langevin_integrator
        • pydft_qmmm.integrators.langevin_integrator.LangevinIntegrator
      • pydft_qmmm.integrators.verlet_integrator
        • pydft_qmmm.integrators.verlet_integrator.VerletIntegrator
    • pydft_qmmm.interfaces
      • pydft_qmmm.interfaces.interface
        • pydft_qmmm.interfaces.interface.MMInterface
        • pydft_qmmm.interfaces.interface.MMPotential
        • pydft_qmmm.interfaces.interface.QMInterface
        • pydft_qmmm.interfaces.interface.QMPotential
        • pydft_qmmm.interfaces.interface.SoftwareInterface
      • pydft_qmmm.interfaces.interface_manager
      • pydft_qmmm.interfaces.openmm
        • pydft_qmmm.interfaces.openmm.openmm_factory
        • pydft_qmmm.interfaces.openmm.openmm_interface
          • pydft_qmmm.interfaces.openmm.openmm_interface.OpenMMInterface
          • pydft_qmmm.interfaces.openmm.openmm_interface.OpenMMPotential
        • pydft_qmmm.interfaces.openmm.openmm_utils
      • pydft_qmmm.interfaces.psi4
        • pydft_qmmm.interfaces.psi4.psi4_factory
        • pydft_qmmm.interfaces.psi4.psi4_interface
          • pydft_qmmm.interfaces.psi4.psi4_interface.Psi4Interface
          • pydft_qmmm.interfaces.psi4.psi4_interface.Psi4Potential
        • pydft_qmmm.interfaces.psi4.psi4_utils
    • pydft_qmmm.potentials
      • pydft_qmmm.potentials.pme_potential
        • pydft_qmmm.potentials.pme_potential.HelPMEPyInterface
        • pydft_qmmm.potentials.pme_potential.PMEElectronicPotential
        • pydft_qmmm.potentials.pme_potential.PMEExcludedPotential
        • pydft_qmmm.potentials.pme_potential.PMENuclearPotential
      • pydft_qmmm.potentials.potential
        • pydft_qmmm.potentials.potential.AtomicPotential
        • pydft_qmmm.potentials.potential.ElectronicPotential
    • pydft_qmmm.plugins
      • pydft_qmmm.plugins.atom_partition
        • pydft_qmmm.plugins.atom_partition.AtomPartition
      • pydft_qmmm.plugins.center
        • pydft_qmmm.plugins.center.CalculatorCenter
        • pydft_qmmm.plugins.center.IntegratorCenter
      • pydft_qmmm.plugins.centroid_partition
        • pydft_qmmm.plugins.centroid_partition.CentroidPartition
      • pydft_qmmm.plugins.firstatom_partition
        • pydft_qmmm.plugins.firstatom_partition.FirstAtomPartition
      • pydft_qmmm.plugins.plugin_manager
      • pydft_qmmm.plugins.plumed
        • pydft_qmmm.plugins.plumed.Plumed
      • pydft_qmmm.plugins.rigid
        • pydft_qmmm.plugins.rigid.Stationary
      • pydft_qmmm.plugins.settle
        • pydft_qmmm.plugins.settle.SETTLE
      • pydft_qmmm.plugins.wrap
        • pydft_qmmm.plugins.wrap.CalculatorWrap
        • pydft_qmmm.plugins.wrap.IntegratorWrap
    • pydft_qmmm.system
      • pydft_qmmm.system.atom
        • pydft_qmmm.system.atom.Atom
      • pydft_qmmm.system.file_manager
      • pydft_qmmm.system.selection_utils
      • pydft_qmmm.system.system
        • pydft_qmmm.system.system.System
      • pydft_qmmm.system.variable
        • pydft_qmmm.system.variable.ArrayValue
        • pydft_qmmm.system.variable.ObservedArray
    • pydft_qmmm.utils
      • pydft_qmmm.utils.constants
        • pydft_qmmm.utils.constants.Subsystem
        • pydft_qmmm.utils.constants.TheoryLevel
      • pydft_qmmm.utils.descriptor
      • pydft_qmmm.utils.exceptions
        • pydft_qmmm.utils.exceptions.AssetImportError
        • pydft_qmmm.utils.exceptions.DependencyImportError
        • pydft_qmmm.utils.exceptions.InterfaceImportError
        • pydft_qmmm.utils.exceptions.PluginImportError
        • pydft_qmmm.utils.exceptions.PyDFTQMMMException
        • pydft_qmmm.utils.exceptions.TheoryLevelError
      • pydft_qmmm.utils.lattice
      • pydft_qmmm.utils.logging
        • pydft_qmmm.utils.logging.DCDHandler
        • pydft_qmmm.utils.logging.EnergyRecord
        • pydft_qmmm.utils.logging.FrameRecord
        • pydft_qmmm.utils.logging.Loggable
        • pydft_qmmm.utils.logging.PositionRecord
        • pydft_qmmm.utils.logging.PyDFTQMMMCSVFormatter
        • pydft_qmmm.utils.logging.PyDFTQMMMEnergyFilter
        • pydft_qmmm.utils.logging.PyDFTQMMMIntervalFilter
        • pydft_qmmm.utils.logging.PyDFTQMMMLogFormatter
        • pydft_qmmm.utils.logging.PyDFTQMMMPositionFilter
      • pydft_qmmm.utils.misc
    • pydft_qmmm.wrappers
      • pydft_qmmm.wrappers.optimization
        • pydft_qmmm.wrappers.optimization.Optimization
      • pydft_qmmm.wrappers.simulation
        • pydft_qmmm.wrappers.simulation.Simulation
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Welcome to PyDFT-QMMM’s documentation!¶

_images/pydft-qmmm-light.svg _images/pydft-qmmm-dark.svg

Contents:

  • Introduction
  • Getting Started
    • Installation
    • Examples
    • Templates
  • Bibliography
  • Code Documentation
    • pydft_qmmm.calculators
    • pydft_qmmm.hamiltonians
    • pydft_qmmm.integrators
    • pydft_qmmm.interfaces
    • pydft_qmmm.potentials
    • pydft_qmmm.plugins
    • pydft_qmmm.system
    • pydft_qmmm.utils
    • pydft_qmmm.wrappers

Indices and tables¶

  • Index

  • Module Index

Next
Introduction
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